Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHLLIVDDEQDIVDICQTYFEYEGYKVTTTTSGKEAISLLSNDIDIMVLDIMMPEVNGYDIVKEMKRQKLDIPFIYLTAKTQEHDTIYALTLGADDYVKKPFSPRELVLRINNLLTRMKKYHHQPVEQLSFDELTLINLSKVVTVNGHEVPMRIKEFELLWYLASRENEVISKSELLEKVWGYDYYEDANTVNVHIHRIREKLEKESFTTYTITTVWGLGYKFERSR
4U88 Chain:A ((1-100))
-------------------------------------------------------------------------------------------------------------------------------EQLSFDELTLINLSKVVTVNGHEVPMRIKEFELLWYLASRENEVISKSELLEKVW-------ANTVNVHIHRIREKLEKESFTTYTITTVWGLGYKFERS-
General information:
TITO was launched using:
RESULT:
Template:
4U88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51020 for 636 contacts (-80.2/contact) +
2D Compatibility (PS) -10506 + (NN) -5238 + (LL) 10120
1D Compatibility (HY) -14800 + (ID) 4650
Total energy: -76094.0 ( -119.64 by residue)
QMean score : 0.746
(partial model without unconserved sides chains):
PDB file :
Tito_4U88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U88-query.scw
PDB file :
Tito_Scwrl_4U88.pdb
: