Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFITVTLALGMIATTGATVTSNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLKKDSYTANLFDSNSIKQIDINVKTK
1YN4 Chain:A ((3-99))
---------------------------------------------HTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK--
General information:
TITO was launched using:
RESULT:
Template:
1YN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33951 for 663 contacts (-51.2/contact) +
2D Compatibility (PS) -10403 + (NN) -1514 + (LL) 4024
1D Compatibility (HY) -7600 + (ID) 2350
Total energy: -51794.0 ( -78.12 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1YN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YN4-query.scw
PDB file :
Tito_Scwrl_1YN4.pdb
: