Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQEHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKIIKVS
1NG5 Chain:A ((5-215))
---------------------------------QERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKIIKVS
General information:
TITO was launched using:
RESULT:
Template:
1NG5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81179 for 1637 contacts (-49.6/contact) +
2D Compatibility (PS) -22593 + (NN) -7047 + (LL) 4384
1D Compatibility (HY) -29200 + (ID) 10500
Total energy: -146135.0 ( -89.27 by residue)
QMean score : 0.799
(partial model without unconserved sides chains):
PDB file :
Tito_1NG5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NG5-query.scw
PDB file :
Tito_Scwrl_1NG5.pdb
: