Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFMAENRLTLTKGTAKDIIERFYTRHGIETLEGFDGMFVTQTLEQEDFDEVKILTVWKSKQAFTDWLKSDVFKAAHKHVRSKNED--ESSPIINNKVITYDIGYSYMK
2ZDP Chain:A ((4-110))
--FMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
General information:
TITO was launched using:
RESULT:
Template:
2ZDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30605 for 659 contacts (-46.4/contact) +
2D Compatibility (PS) -11334 + (NN) -1483 + (LL) 272
1D Compatibility (HY) -12000 + (ID) 3450
Total energy: -58600.0 ( -88.92 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_2ZDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZDP-query.scw
PDB file :
Tito_Scwrl_2ZDP.pdb
: