Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLDHLRERLVGRGTESNEKIQSRINEARKEVEMMNLYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAKYRKMILEAKK
2J41 Chain:A ((4-197))
---EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS---------------------------KEVEMMNLYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAK----------
General information:
TITO was launched using:
RESULT:
Template:
2J41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83859 for 1223 contacts (-68.6/contact) +
2D Compatibility (PS) -17746 + (NN) -3252 + (LL) 3104
1D Compatibility (HY) -24800 + (ID) 8350
Total energy: -134903.0 ( -110.30 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_2J41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J41-query.scw
PDB file :
Tito_Scwrl_2J41.pdb
: