Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAV----LTIFQHPLTSFNPD-WTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLP-----------SEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQTFSY
4RY2 Chain:A ((489-724))
-IEFRNVDFRYGLRKPVLKNINLTIPKGKTVAIVGESGSGKTTLAKLLMNFYSPEKGDILINGHSIKNISLELIRKKIAFVSQDVFIFSGTVKENLCLG---NENVDMDEII--KAAKMANAHDFIEKLPLKYDTFLNESGANLSEGQKQRLAIARALLKKPDILILDEATSNLDSITENHIKDAIYG--LEDDVTVIIIAHRLSTIVN-CDKIYLLKDGEIVESGSHTELIAL-KGCYFKMWKQT---
General information:
TITO was launched using:
RESULT:
Template:
4RY2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156943 for 1635 contacts (-96.0/contact) +
2D Compatibility (PS) -23466 + (NN) -8853 + (LL) 1076
1D Compatibility (HY) -21600 + (ID) 3850
Total energy: -213636.0 ( -130.66 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_4RY2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RY2-query.scw
PDB file :
Tito_Scwrl_4RY2.pdb
: