Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLK----LNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK
1Q3T Chain:A ((14-230))
MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKA------
General information:
TITO was launched using:
RESULT:
Template:
1Q3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75066 for 1621 contacts (-46.3/contact) +
2D Compatibility (PS) -22980 + (NN) -9730 + (LL) 760
1D Compatibility (HY) -17600 + (ID) 5550
Total energy: -130166.0 ( -80.30 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_1Q3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q3T-query.scw
PDB file :
Tito_Scwrl_1Q3T.pdb
: