Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASLVSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTVAELLPFGFSGKDLE
1JTK Chain:A ((5-130))
-----ELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKAVSEG--DTEFQMLAVAADTPGPVSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDL-
General information:
TITO was launched using:
RESULT:
Template:
1JTK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43348 for 994 contacts (-43.6/contact) +
2D Compatibility (PS) -14174 + (NN) -9649 + (LL) 548
1D Compatibility (HY) -10800 + (ID) 3100
Total energy: -80523.0 ( -81.01 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1JTK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JTK-query.scw
PDB file :
Tito_Scwrl_1JTK.pdb
: