Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNK-------NELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
2YKR Chain:T ((2-78))
--NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIE--AGDKAAAQKAFNEMQP----IVDRQAAKGLIHKNKAARHKANL-----
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7166 for 386 contacts (-18.6/contact) +
2D Compatibility (PS) -7046 + (NN) 1165 + (LL) 1156
1D Compatibility (HY) -2000 + (ID) 1700
Total energy: -15591.0 ( -40.39 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: