Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEASV--TNDTLNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
1J7G Chain:A ((1-139))
MIALIQRVSQAKVDVKGETIG-KIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDKMNLNVQQAQGELLIVSQFTLAADTQKGLRPSFSKGASPALANELYEYFIQKC-AEKLPVSTGQFAADMQVSLTNDGPVT-----------
General information:
TITO was launched using:
RESULT:
Template:
1J7G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63401 for 1036 contacts (-61.2/contact) +
2D Compatibility (PS) -14879 + (NN) -5049 + (LL) 856
1D Compatibility (HY) -12400 + (ID) 3200
Total energy: -98073.0 ( -94.67 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_1J7G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J7G-query.scw
PDB file :
Tito_Scwrl_1J7G.pdb
: