Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKFFFIGLLVFVVFFTAATIIWFSYDKNKYGTKQYDKTFKDDAFDNVSINLDSTELRIKRGNQFRVKYDGDNDILINIVDKTLKISDKRSKTRGYAIDMNPFHENKKTLTIEMPDKMIKRLNLSSGAGSVRISDVDLENTSIQSINGEVVIKNSNLDALDSKTNNSSTYISKSNIKNSNIKVVIGTLQIDKSQIKQSIFLNDHGDIEFKNMPSKVDAKASTKQGDIRFKYDSKPEDTILKLNPGTGDSVVKNKTFTNGKVGKSDNVLEFYTIDGNIKVE |
3JAE Chain:A ((31-93)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VTCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYSEYPDDS-LDLDPSMLDSIWKPDLF------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JAE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 11189 for 241 contacts (46.4/contact) +
2D Compatibility (PS) -6374 + (NN) -2566 + (LL) 12732
1D Compatibility (HY) -4800 + (ID) 950
Total energy: 9231.0 ( 38.30 by residue)
QMean score : 0.167
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