Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNAIELSNVNYS-SDQFNLKNISFKVPQGFVTGFIGRNGAGKTTIIRLIMDLYQPQTGVIRVLEEDMALNPIELKNSIGFVYSENYFNERWTTKQLEKMIAPFY--------RKWDHQVFEFYLEKFDLPINKSIKTFSTGMKMKLSLAVAFSHHAELYIFDEPTSGLDPLARNELLEIIQQELIDENKTIFMSTHIISDLEKIADYIIHLSDGEVILNGSKEQLLQRYQVVSGATEDLDDELASLLIYEEHKRTGFIGLTEHAQVFKEILGHKVNITTPSIENLMVYLEKRKPKYHENIKLMEEGF |
4RVC Chain:A ((2-239)) | -TLLEVKDLSGGYTAQNVLEDVTFVVDRGEMVALIGLNGAGKSTTIKHIIGLMEPRRGAISINGYRLADGPETYRRQFAYIPETPVLYEELTLEEHLRLAAMAYGLSEAEYERRLPPLLREFRLERR---LSSFPAHFSKGMKQKVMIVCAFLLEPPLYIIDEPFLGLDPLAIHALLERMNEQKA-KGAGILLSTHILATAERYCDSFVILHNGRVKAKGTLDDIRRQFGLRGASLDELYVEL---------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RVC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141887 for 1840 contacts (-77.1/contact) +
2D Compatibility (PS) -25017 + (NN) -10287 + (LL) 5324
1D Compatibility (HY) -14000 + (ID) 3400
Total energy: -189267.0 ( -102.86 by residue)
QMean score : 0.557
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