Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDEAKFVLLQLYSIYLGRIDEGMSKHSASYFGSDESSFNAFFLG---FNFEDYIDAVLELKHRDFVIASAEDGGFLEMALSREGIAYSESESKKDYKTLMGLIRDLKKLII
1K9J Chain:A ((18-61))
---------------------------------------NCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSR-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1K9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12299 for 192 contacts (-64.1/contact) +
2D Compatibility (PS) -4303 + (NN) -290 + (LL) 4756
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -16436.0 ( -85.60 by residue)
QMean score : 0.133
(partial model without unconserved sides chains):
PDB file :
Tito_1K9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K9J-query.scw
PDB file :
Tito_Scwrl_1K9J.pdb
: