Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKRLFISRVILIFALILVISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
1CQV Chain:A ((1-239))
---------------------------ESQPDPTPDELHKSSEFTGTMGNMKYLYDDHYVSATKVMSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSK-------GGKTCMYGGITKHEGNHFDNGNLQNVLIRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
General information:
TITO was launched using:
RESULT:
Template:
1CQV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37743 for 1798 contacts (-21.0/contact) +
2D Compatibility (PS) -25660 + (NN) -16938 + (LL) 3540
1D Compatibility (HY) -30800 + (ID) 11400
Total energy: -119001.0 ( -66.19 by residue)
QMean score : 0.742
(partial model without unconserved sides chains):
PDB file :
Tito_1CQV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CQV-query.scw
PDB file :
Tito_Scwrl_1CQV.pdb
: