Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTLVNMFFDFIIKLAKAIGIVGGVNACSSLFDEPKVPAELTNLYDK
3JAM Chain:N ((81-93))
---------------------------------APEIPEDLYFLIK-
General information:
TITO was launched using:
RESULT:
Template:
3JAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85 for 46 contacts (-1.8/contact) +
2D Compatibility (PS) -1423 + (NN) -1930 + (LL) 2632
1D Compatibility (HY) -1600 + (ID) 200
Total energy: -2606.0 ( -56.65 by residue)
QMean score : 0.884
(partial model without unconserved sides chains):
PDB file :
Tito_3JAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JAM-query.scw
PDB file :
Tito_Scwrl_3JAM.pdb
: