Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
1R1V Chain:A ((9-103))
--------NTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKE---
General information:
TITO was launched using:
RESULT:
Template:
1R1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47582 for 605 contacts (-78.6/contact) +
2D Compatibility (PS) -10127 + (NN) -5761 + (LL) 752
1D Compatibility (HY) -12800 + (ID) 4750
Total energy: -80268.0 ( -132.67 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_1R1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R1V-query.scw
PDB file :
Tito_Scwrl_1R1V.pdb
: