Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLVTATTLTAGIGTALVGQAH--HADAAENYTNYNNYNYNTTQTTTTTTTTTTTSSISHSGNLYTAGQCTWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTVNHTPSKGAILQSSEGPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI
2K3A Chain:A ((1-154))
MKKLVTATTLTAGIGAAIVGLDHGNEADAAEQ--------------TQPTNQSTTQSTSGSSANLYTAGQCTWYVYDKVGGNIGSTWGNANNWASAASSAGYTVNNSPEAGSILQSTAGGYGHVAYVENVNSDGSVEVSEMNYNGGPFSVSERTISAGEASSYNYIHL
General information:
TITO was launched using:
RESULT:
Template:
2K3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67489 for 952 contacts (-70.9/contact) +
2D Compatibility (PS) -16764 + (NN) -10425 + (LL) 296
1D Compatibility (HY) -14800 + (ID) 5600
Total energy: -114782.0 ( -120.57 by residue)
QMean score : 0.324
(partial model without unconserved sides chains):
PDB file :
Tito_2K3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K3A-query.scw
PDB file :
Tito_Scwrl_2K3A.pdb
: