Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQRQGVNKAAVSRRIKKLIDAKLVKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQDITNDLNSEDIENVRQVLEVINHRIKTYSNHK
3KP3 Chain:A ((4-149))
---RIEDHISFLEKFINDVNTLTAKLLKDLQTEYGISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL------------IIKLSNKGKKYIKERKAIMSHIASDMTSDFDSKEIEKVRQVLEIIDYRIQSYTS--
General information:
TITO was launched using:
RESULT:
Template:
3KP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48282 for 794 contacts (-60.8/contact) +
2D Compatibility (PS) -14434 + (NN) -3611 + (LL) 1024
1D Compatibility (HY) -18000 + (ID) 4200
Total energy: -87503.0 ( -110.21 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_3KP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KP3-query.scw
PDB file :
Tito_Scwrl_3KP3.pdb
: