Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK
3BD2 Chain:A ((14-177))
-------------------------------GKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDQNKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLK----
General information:
TITO was launched using:
RESULT:
Template:
3BD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49167 for 1301 contacts (-37.8/contact) +
2D Compatibility (PS) -17655 + (NN) -8594 + (LL) 2948
1D Compatibility (HY) -21600 + (ID) 8100
Total energy: -102168.0 ( -78.53 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_3BD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BD2-query.scw
PDB file :
Tito_Scwrl_3BD2.pdb
: