Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVLTIEHLTKKIGNKTILEDVSFKLKRGQIVGLVGANGAGKTTLMKVILGYSSFQSG-----NFNVINSKDS-KSNIGALIENPGIYPFMSGYENLKL------LNESKNTQDIDKIVSQLHMDEYIHKKAKTYSLGMKQKLGIAIAFLNEPQFIILDEPMNGLDPKAVRDVRELIVQKSQEGVTFLISSHILSELVKITNSILIINKGKIVTETSEEELKQFKDNDLENVLLEIIEREDQA
4RVC Chain:A ((2-223))
-TLLEVKDLSGGYTAQNVLEDVTFVVDRGEMVALIGLNGAGKSTTIKHIIGLMEPRRGAISINGYRLADGPETYRRQFAYIPETPVLYEELTLEEHLRLAAMAYGLSEAEYERRLPPLLREFRLERRLSSFPAHFSKGMKQKVMIVCAFLLEPPLYIIDEPFLGLDPLAIHALLERMNEQKAKGAGILLSTHILATAERYCDSFVILHNGRVKAKGTLDDIRR--------------------
General information:
TITO was launched using:
RESULT:
Template:
4RVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117301 for 1596 contacts (-73.5/contact) +
2D Compatibility (PS) -22380 + (NN) -5517 + (LL) 1924
1D Compatibility (HY) -18800 + (ID) 3050
Total energy: -165124.0 ( -103.46 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_4RVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RVC-query.scw
PDB file :
Tito_Scwrl_4RVC.pdb
: