Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSWGAAKQLDTASHFVLIFARKNVTSRSPYVQHMLRDIKKYEAQTIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQD-PPKN--KTRQAYEDVIEWVGPKE
2H0U Chain:A ((11-217))
------------HQRFAAKKYDPNRRISQKDWEALVEVGRLAPSSIGLEPWKMLLLKN--------------------ASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTNSRFAQIIKNFQENDMKLNSERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLEEKGYLNTAEFGVSVMACFGYRNQEITPKTRWKTEVIYE-VIE------
General information:
TITO was launched using:
RESULT:
Template:
2H0U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81484 for 1287 contacts (-63.3/contact) +
2D Compatibility (PS) -19531 + (NN) -5162 + (LL) 2716
1D Compatibility (HY) -19200 + (ID) 4450
Total energy: -127111.0 ( -98.77 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2H0U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H0U-query.scw
PDB file :
Tito_Scwrl_2H0U.pdb
: