Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
2VED Chain:A ((42-267))
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGMSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYG----
General information:
TITO was launched using:
RESULT:
Template:
2VED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99544 for 1910 contacts (-52.1/contact) +
2D Compatibility (PS) -25485 + (NN) -19620 + (LL) 52
1D Compatibility (HY) -30400 + (ID) 11200
Total energy: -186197.0 ( -97.49 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_2VED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VED-query.scw
PDB file :
Tito_Scwrl_2VED.pdb
: