Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK
1SD4 Chain:A ((5-126))
----QVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK
General information:
TITO was launched using:
RESULT:
Template:
1SD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55054 for 740 contacts (-74.4/contact) +
2D Compatibility (PS) -13295 + (NN) -7735 + (LL) 244
1D Compatibility (HY) -18400 + (ID) 6100
Total energy: -100340.0 ( -135.59 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_1SD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD4-query.scw
PDB file :
Tito_Scwrl_1SD4.pdb
: