Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKYSAIPTPCYALESERLEKNAKILEIVRQQSGAKVLLALKGYAFWREFGILRQKLNGCCASGLYEAKLAFEEFGGRESHKEICVYSPAFKEAEMSAILPLATSIIFNSFHQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPAIYNPCSKMSRLGITPSGFEKGVKEHGLEGVSGLHFHTHCEQNADALC-RTLEHVERHFKPYLENMAWVNFGGGHHITRSDYDVNLLIQTIKDFKERYHNTEVILEPGEAIGWQCGFLIASVIDIVQNDQEIAILDASFSAHMPDCLEMPYRPSILKVSVENDEEIIEVEKGENQGAFSYFLGGPTCLAGDFMGSFSFETPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSLAKIDSQG-FKILKSFSYEDYKNRN |
3MT1 Chain:A ((2-361)) | ------IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERFG-----KETHAYSVAYGDNEIDEVVSHADKIIFNSISQLERFADKA------------AGIARGLRLNPQ----------------RLG----EWDVPKVERVMDRINGFMIHNN--NKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRY-GVQIYLEPGEASITKSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKVLP----------------NEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3MT1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -230213 for 2826 contacts (-81.5/contact) +
2D Compatibility (PS) -36611 + (NN) -12020 + (LL) 3612
1D Compatibility (HY) -27600 + (ID) 6450
Total energy: -309282.0 ( -109.44 by residue)
QMean score : 0.560
|
|
|