Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLLNYDFLELVDDEPQRNTSLTSAIDKALADKKLARQNKPRVRVKDNLSLSETLDAYGRELSRLKNQQETIKASTIESSNLNSIVNKIKSGLPFGTISAFRPFKEAFIKDFTQDERELLVEAYKSGYKASQLDKVSKKWRDDPNPIDASYLADAFLREYRTIALKLSTALGKPFVNKFLNPKSETTMKDFMSSEKFVKKYRFTQKDNIKRTQELKSLLDQKRHFLGYLQVTGYWKDKLNDPLLPSKEVSFFVFQNEPSNSFNLKDQLLDLAKYFNQEAICYCQNAETGKVDLVLATEKDFGKVDMTFTGITFTIPLTQSITRLHNKVYTFFDKQGKDNYGVFFDELSTTKLKAMSIPKIADEFYRHLENRVKSFIRARQYHGSPRTFDADDIEKYELQAIKRLDLQRCAKSKSFKASYNHNIKINNLANALRQGKEVSKTLITKVLANTIDTDAGYCFISDLATQLGNISPRLSKSIVTAIEQAEGIRLLYALIDKVSYNSLHNTLNFIFDIDNPMSDQSLNELVVEVPREALKNVKLPQIKNELTSQIFDGAYQFRGNDYQFKG |
| 1YGM Chain:A ((29-100)) | --------------------------------------------------------------------------------------------------------------VTSEEKEQLSTAIDR--MNEGLDAFIQLYNESE----IDEPLIQLDDDTAELMKQARDMYGQEKLNEKL----NTIIKQILSISVSEEGEKELVPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YGM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 9462 for 475 contacts (19.9/contact) +
2D Compatibility (PS) -7202 + (NN) -1853 + (LL) 31788
1D Compatibility (HY) -1600 + (ID) 650
Total energy: 29945.0 ( 63.04 by residue)
QMean score : 0.334
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