Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFSQLGGLSGLLDGVKKEFSQLEEKNKDTIH-------TSKSGGGMVSVSFNGLGELVDLQIDDSLLE-DKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL
1PUG Chain:A ((11-89))
------------M----KQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP
General information:
TITO was launched using:
RESULT:
Template:
1PUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12559 for 390 contacts (-32.2/contact) +
2D Compatibility (PS) -7821 + (NN) -4339 + (LL) 348
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -29321.0 ( -75.18 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1PUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PUG-query.scw
PDB file :
Tito_Scwrl_1PUG.pdb
: