Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASALLEALWFVGFF--ALFNYALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVLFAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLLVVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSAFQSLQHATTSPAPSHISSSASQSVSKEKETHSPTFKVETTQLDVKIPNFKQKKVKKDTIDTKNEI |
4M3C Chain:B ((64-138)) | -----------------TGVVASFATSFRFTIYAPNIATIADGLAFFLAPVSSPPKA----------GAGFLGLFDSAVFNSSYQTVAVEFDTYENTVFLDPPDTHIGIDVNSIKSIKTVKWDLANGEAAKVLITYDSSAKLLVAALVYPSSKTSFILSDVVDLKSVLPEWVSIGFSAATGASSGYIETHDVFSWSFASKLSF------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4M3C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31695 for 351 contacts (-90.3/contact) +
2D Compatibility (PS) -7153 + (NN) 4023 + (LL) 17280
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -23395.0 ( -66.65 by residue)
QMean score : -0.109
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