Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVSRFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKVSKFTPGYEESKARVLNALNILSKHQIWQSNQESVTKVKGTFVFILENDLHLDENSFYKKLLNLIIDNDFFNRSHLVTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALALGKAILKSARNDTNPSR
3AV5 Chain:A ((1253-1304))
-------------------------------------------------------------------------------------------------------------------------HPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEI------------
General information:
TITO was launched using:
RESULT:
Template:
3AV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13088 for 276 contacts (-47.4/contact) +
2D Compatibility (PS) -5503 + (NN) -2756 + (LL) 7828
1D Compatibility (HY) -1200 + (ID) 1400
Total energy: -16119.0 ( -58.40 by residue)
QMean score : 0.269
(partial model without unconserved sides chains):
PDB file :
Tito_3AV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AV5-query.scw
PDB file :
Tito_Scwrl_3AV5.pdb
: