Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTAKVNDIVRDWVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHPHTAQTSKKDAK
3J3W Chain:J ((4-136))
-TPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQHPGGLKSRTALEMRTNYPEKMLELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYEL
General information:
TITO was launched using:
RESULT:
Template:
3J3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36101 for 855 contacts (-42.2/contact) +
2D Compatibility (PS) -14404 + (NN) -5587 + (LL) 208
1D Compatibility (HY) -8400 + (ID) 3450
Total energy: -67734.0 ( -79.22 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_3J3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J3W-query.scw
PDB file :
Tito_Scwrl_3J3W.pdb
: