Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMNVESFNLDHTKVKAPYVR-IADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHANY-----VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV
2FQO Chain:A ((4-150))
----VESFELDHNAVVAPYVRHCGVHKVGTDG-VVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVF
General information:
TITO was launched using:
RESULT:
Template:
2FQO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60307 for 995 contacts (-60.6/contact) +
2D Compatibility (PS) -14680 + (NN) -3926 + (LL) 324
1D Compatibility (HY) -12000 + (ID) 3550
Total energy: -94139.0 ( -94.61 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_2FQO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FQO-query.scw
PDB file :
Tito_Scwrl_2FQO.pdb
: