Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYELVNQGSKK
2K1K Chain:A ((552-568))
------IFGLLLGAALLLGILVF---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2K1K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11119 for 62 contacts (-179.3/contact) +
2D Compatibility (PS) -1593 + (NN) -303 + (LL) 3736
1D Compatibility (HY) -2400 + (ID) 350
Total energy: -12029.0 ( -194.02 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_2K1K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K1K-query.scw
PDB file :
Tito_Scwrl_2K1K.pdb
: