Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA--NLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLE--ATQNAPFMATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRDFDAKRQ----TPLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKI-VQSESMGIDTKEDLQNALKIFSPNLLKR
3OAM Chain:A ((5-248))
-VVIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGADRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAG-FINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAERAQ--
General information:
TITO was launched using:
RESULT:
Template:
3OAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140488 for 1821 contacts (-77.1/contact) +
2D Compatibility (PS) -25593 + (NN) -12767 + (LL) 92
1D Compatibility (HY) -14400 + (ID) 4550
Total energy: -197706.0 ( -108.57 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3OAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OAM-query.scw
PDB file :
Tito_Scwrl_3OAM.pdb
: