Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEITFYYEKGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYITSLGHKDERKDPSKP
1DG9 Chain:A ((39-123))
-----------WVIDSGA-----VSDWNVGRS--PDPRAVSCLRNHGINTAHK---------------ARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDPQKQLIIE
General information:
TITO was launched using:
RESULT:
Template:
1DG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15745 for 475 contacts (-33.1/contact) +
2D Compatibility (PS) -8503 + (NN) 2284 + (LL) 3872
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -23392.0 ( -49.25 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1DG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DG9-query.scw
PDB file :
Tito_Scwrl_1DG9.pdb
: