Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLFDFFKNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDGNQSVETIEVEIILPK
3MCD Chain:A ((16-76))
---------------ATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTL-----VETIEVEIILP-
General information:
TITO was launched using:
RESULT:
Template:
3MCD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21253 for 304 contacts (-69.9/contact) +
2D Compatibility (PS) -6035 + (NN) -857 + (LL) 692
1D Compatibility (HY) -9200 + (ID) 2800
Total energy: -39453.0 ( -129.78 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_3MCD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MCD-query.scw
PDB file :
Tito_Scwrl_3MCD.pdb
: