Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAHKERLESNLLELLQEALASLNDSELNSLS-VTKVECSKGKHHALVFVLSSDHK-------ILSKLKKAEGLIRQFVLQASGWFKCPKLSFVLDDSLEKQLRLDAIFNEIAKGKDND
1KKG Chain:A ((27-108))
----------------------IKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMR---------------
General information:
TITO was launched using:
RESULT:
Template:
1KKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6678 for 461 contacts (-14.5/contact) +
2D Compatibility (PS) -7976 + (NN) -3990 + (LL) 2900
1D Compatibility (HY) -7200 + (ID) 1150
Total energy: -24094.0 ( -52.26 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_1KKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KKG-query.scw
PDB file :
Tito_Scwrl_1KKG.pdb
: