Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKRAKTKAQQIK---ELLLKHYPNQTTELRHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLALASLEEVKEIIQSVSYSNNKSKHLISMGAKVVKDFKGVIPSTQKELMSLDGVGQKTANVVLSVCFDANYIAVDTHVFRTTHRLGLSNANTPI-KTEEELSDLF-KDNLSKLHHALILFGRYTCKAKNPLCDACFLKEFCVSKASFKA
1ORP Chain:A ((8-208))
----------QQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMR
General information:
TITO was launched using:
RESULT:
Template:
1ORP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122453 for 1535 contacts (-79.8/contact) +
2D Compatibility (PS) -20934 + (NN) -12861 + (LL) 988
1D Compatibility (HY) -18000 + (ID) 4200
Total energy: -177460.0 ( -115.61 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_1ORP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ORP-query.scw
PDB file :
Tito_Scwrl_1ORP.pdb
: