Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKMNAPDGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCP-DFAIYVADRKDFKFAKVSKEAQERSEKVKANKYMLLEETILEGRGK
1JB0 Chain:C ((8-61))
----------------DTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36627 for 313 contacts (-117.0/contact) +
2D Compatibility (PS) -5302 + (NN) -1284 + (LL) 3464
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -43299.0 ( -138.34 by residue)
QMean score : 0.289
(partial model without unconserved sides chains):
PDB file :
Tito_1JB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JB0-query.scw
PDB file :
Tito_Scwrl_1JB0.pdb
: