Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIFIDACFRKETPYTPIWMMRQAGRYLSEYQESRKKAGSFLELCKNSDLATEVTLQPVEILGVDAAILFSDILVVPLEMGLNLEFIPKKGPHFLETITDLKSVESLKV-GVYKQLNYVYDTISQTRQKLSKEKALIGFCGSPWTLATYMIEGEGSKSYAKSKKMLYSEPEVLKALLEKLSLELIEYLSLQIQAGVNAVMIFDSWASALEKEAYLEFSWDYLKKISKELKKRY--AHIPVILFPKGIGAYLDSI-DGEFDVFGVDWGTPLTAAKKILGGKYVLQGNLEPTRLYDKNA-LEEGVEKILKVMGN-QGHIFNLGHGMLPDLPRENAKYLVQLVHAKTRR |
| 3CYV Chain:A ((9-346)) | --YLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CYV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257822 for 2968 contacts (-86.9/contact) +
2D Compatibility (PS) -35553 + (NN) -11903 + (LL) 412
1D Compatibility (HY) -33600 + (ID) 7800
Total energy: -346266.0 ( -116.67 by residue)
QMean score : 0.548
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