Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKMNKVVLHKEYSGFVRFFHWVRALSIFTLIATGFYIAYPFLQPNSSFYKGVYLLQAYVRSFHVMFGFLLISALIFRTYLFFTKESLMERRSFSQLLSPKAWIDQMKAYFLISDKPHTKGLYNPIQLVAYFTLVVLIVLMSLSGIVLYYNVYHEGLGAFLANAFKWFEALCGGLANVRFIHHLATWGFILFVPVHVYMVFFHSIRYDSSGADSMINGYGYTKE
1KQG Chain:C ((15-135))
-----------------RACHWTVVICFFLVALSGISFFFPTLQ----WLTQTFGTPQMGRILHPFFGIAIFVALMF-MFVRFVHHNIPDKKDIPWLLNI---VEVLKGN---EHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAK
General information:
TITO was launched using:
RESULT:
Template:
1KQG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71157 for 783 contacts (-90.9/contact) +
2D Compatibility (PS) -12263 + (NN) -2643 + (LL) 2076
1D Compatibility (HY) -12000 + (ID) 1300
Total energy: -97287.0 ( -124.25 by residue)
QMean score : 0.203
(partial model without unconserved sides chains):
PDB file :
Tito_1KQG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KQG-query.scw
PDB file :
Tito_Scwrl_1KQG.pdb
: