Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTMNAIRWPKKWIPGETDNFVSNEVIVKGLDFNKVVQHLRDASHWEKYYKNSGNIHMYH-QDNTILKDKTRFCFETFGFLVE--AEVEEFELKDAILRLAWRG----WNEAKGDEYLEVYHAWLVEKLDNDRVRILTQESQSGVPAKALAKSVPNAMLNGHQAWLDGLVAYSR
2BGV Chain:X ((4-97))
-----------------------------------------DAAKGEKEFNKCKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKMTFKLGKNQADVVAFLAQHSPD---------------
General information:
TITO was launched using:
RESULT:
Template:
2BGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8113 for 497 contacts (-16.3/contact) +
2D Compatibility (PS) -9029 + (NN) -851 + (LL) 4048
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -18495.0 ( -37.21 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_2BGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BGV-query.scw
PDB file :
Tito_Scwrl_2BGV.pdb
: