Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVITDLDKALSGLKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYVGENKIFESQMLNGEIEVVLTPQGTLAENLRAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKTTTRSAK
3CDK Chain:A ((4-232))
-GKVLSSSKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQGVKDLTVVSNNCGVDDWGLGLLLANKQIKKMIASYVGENKIFERQFLSGELEVELVPQGTLAERIRAGGAGIPGFYTATGVGTSIAEGKEHKTFGGRTYVLERGITGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEKRTVQQ--
General information:
TITO was launched using:
RESULT:
Template:
3CDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128605 for 1960 contacts (-65.6/contact) +
2D Compatibility (PS) -24746 + (NN) -10180 + (LL) 416
1D Compatibility (HY) -22000 + (ID) 7600
Total energy: -192715.0 ( -98.32 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_3CDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CDK-query.scw
PDB file :
Tito_Scwrl_3CDK.pdb
: