Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFKVPPKAKGFKRLFKALFYSKDGLKCAWAEESAFRQIVILALFCIVLASYLTKDFLEWGLLILPCFLSVVIELINSSIEKAVDFTGTEFHPLAKKAKDMASSAQLIGLIFWAFIWGRYLLTLYFN
4BPD Chain:A ((13-121))
---------TTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLCVVIAAWLDVDAVTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWAILLWSHFG-
General information:
TITO was launched using:
RESULT:
Template:
4BPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50811 for 595 contacts (-85.4/contact) +
2D Compatibility (PS) -11641 + (NN) -7403 + (LL) 104
1D Compatibility (HY) -10400 + (ID) 2350
Total energy: -82501.0 ( -138.66 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_4BPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BPD-query.scw
PDB file :
Tito_Scwrl_4BPD.pdb
: