Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFKNKKWLFLAPLAGYTDLPFRSVVKKFG-VDVTTSE---MVSSHSLVYAFDKTSKMLE---KSPLEDHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVEILKVIRENTNKKI-TSVKVRLGFEKKIPK-EIAHALNDAPVDYVVVHGRTRSDRYQKDKIDYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNNTTELPAVVKKDLVLEHFDKMVEFYGDRGVIMFRKNLHAYAKGEMQASAFRNCVNTLTEIKSMRESIEEFFNQEMLQSEVPLWVELNQKSV |
| 3W9Z Chain:A ((3-245)) | --------VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGS-WGVDLNCGC-------------LLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEHVARIKQWLSYLRKEYDEATELFQHVRVSPDIARAIQAIDIEK--------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W9Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102365 for 1910 contacts (-53.6/contact) +
2D Compatibility (PS) -23597 + (NN) -12158 + (LL) 2864
1D Compatibility (HY) -15600 + (ID) 3650
Total energy: -154506.0 ( -80.89 by residue)
QMean score : 0.416
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