Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPDVLLDSFKIALVKKDSKLAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQSQMHKAKQIQKFLS
2ODM Chain:A ((7-29))
-------MKNAALKQLTKDADEILHLIKVQLDNLCPLYEEVLDTQMFGLQKEVDFAVKLGLVDREDGKQIMLRLEKELS
General information:
TITO was launched using:
RESULT:
Template:
2ODM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1304 for 80 contacts (16.3/contact) +
2D Compatibility (PS) -2270 + (NN) -1265 + (LL) 252
1D Compatibility (HY) 1200 + (ID) 100
Total energy: -879.0 ( -10.99 by residue)
QMean score : 0.198
(partial model without unconserved sides chains):
PDB file :
Tito_2ODM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ODM-query.scw
PDB file :
Tito_Scwrl_2ODM.pdb
: