Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIHIGVLSASDRASKGVYEDLSGKAIQEVLSEYLLNPLEFHYEIVADERDLIEKSLIKMCDEYQCDLVVTTGGTGPALRDITPEATKKVCQKMLPGFGELMRMTSLKYVPTAILSRQSAGIRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNEKNIQAFRPKQ
2PBQ Chain:A ((8-178))
-----IGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQVPTAILSRQTAGIRGSCLIVNLPGKPQSIKVCLDAVMPAIPYCIDLIGGAYIDTDPNKVKAFRPKK
General information:
TITO was launched using:
RESULT:
Template:
2PBQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113957 for 1423 contacts (-80.1/contact) +
2D Compatibility (PS) -17593 + (NN) -1029 + (LL) 628
1D Compatibility (HY) -20400 + (ID) 5500
Total energy: -157851.0 ( -110.93 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_2PBQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PBQ-query.scw
PDB file :
Tito_Scwrl_2PBQ.pdb
: