Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEVRFFGPIKE---------ENFFIKANGLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLDMPLKDGDVISLLPPVCGG
1NVI Chain:D ((1-81))
MVKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLV-SFDHPLTDGDEVAFFPPVTGG
General information:
TITO was launched using:
RESULT:
Template:
1NVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28793 for 451 contacts (-63.8/contact) +
2D Compatibility (PS) -7822 + (NN) -1071 + (LL) -76
1D Compatibility (HY) -2800 + (ID) 1250
Total energy: -41812.0 ( -92.71 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1NVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NVI-query.scw
PDB file :
Tito_Scwrl_1NVI.pdb
: