Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDANCLKLMFVAGSQDFYHIKGDRTNALLDTLELALQSKITAFQFRQKGDLALQDPVEIKRLALECQKLCKKYGTPFIINDEVRLALELKADGVHVGQEDMAIEEVVTLCQKRLFIGLSVNTLEQALKARHLDHIAYLGVGPIFPTPSKKDAKEVVGVNLLKKIHDSGVEKPLIAIGGITTDNASKLQKFS--GIAVISAITQAKDKALAVEKLLKNA
2TPS Chain:A ((18-216))
------LSVYFIMGSNN---TKAD----PVTVVQKALKGGATLYQFREKGGDALTGEARIK-FAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGD-MILGVSAHTMSEVKQAEE-DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEI
General information:
TITO was launched using:
RESULT:
Template:
2TPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148653 for 1633 contacts (-91.0/contact) +
2D Compatibility (PS) -21700 + (NN) -16630 + (LL) 1244
1D Compatibility (HY) -12000 + (ID) 4100
Total energy: -201839.0 ( -123.60 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2TPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TPS-query.scw
PDB file :
Tito_Scwrl_2TPS.pdb
: