Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCGVLSLQARLSFENCSKPLDCSLFATTCTPQNPIGSCMVSSQGGVCGVLSLQARLSFENCSKPLDCSLFATTCTPQNPIGSCMVSSQGGVRGVLSLQARLSFKNCFLVKSLKPSQLTLMLTGFLGGFSFLTTGFW
3VYR Chain:B ((335-360))
------------------PTDCPLFGKTCTPRHPVGPCMVSYEGTCQIFYKYGVLF--------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10813 for 126 contacts (-85.8/contact) +
2D Compatibility (PS) -2799 + (NN) -3353 + (LL) 5988
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -14577.0 ( -115.69 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_3VYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VYR-query.scw
PDB file :
Tito_Scwrl_3VYR.pdb
: