Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFQNENKLKVGASVKATI-NDKVVEAKVISIGF-NRVTLRSEKGQRSHLRFQ
3P8D Chain:A ((85-126))
------SEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYDGVVQ-----
General information:
TITO was launched using:
RESULT:
Template:
3P8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9492 for 214 contacts (-44.4/contact) +
2D Compatibility (PS) -4464 + (NN) -285 + (LL) 884
1D Compatibility (HY) -3200 + (ID) 350
Total energy: -16907.0 ( -79.00 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_3P8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P8D-query.scw
PDB file :
Tito_Scwrl_3P8D.pdb
: