Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIELDINASDKSLSHRAVIFSLLAQKPCFVRNFLMGEDCLSSLEIAQNLGAKVENTAKNSFKITPP---TTIKEPNKILNCNNSGTSMRLYSGLLSAQKGLFVLSGDNSLNARPMKRIIEPLKAFGAKILGREDNHFAPLAIVGGP-LKACDYESPIASAQVKSAFILSALQAQGISAYKESELSRNHTEIMLKSLGANIQNQDGVLKISPLEKPLESFDFTIANDPSSAFFLALACAITPKSRLLLKNVLLNPTRIEAFEVLKKMGAHIEYV-IQSKDLEVIGDIYIEHAPLKAISIDQNIASL-IDEIPALSIAMLFAKGKSMVRNAKDLRAKESDRIKAVVSNFKALGIECEEFEDGFYIEGLGDASQLKQHFSKIKPPIIKSFNDHRIAMSFAVL-TLAL-PLEIDNLECANISFPTF-----QLWLNLFKKRSLNGN |
3ROI Chain:A ((22-438)) | --------GDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKI--DSTGNVPPLKIYGNPRLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQ----SICVSGGGK-LKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKNE-PTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQG-----------GTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGMNVKGVRGR--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3ROI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -289624 for 3498 contacts (-82.8/contact) +
2D Compatibility (PS) -41864 + (NN) -6239 + (LL) 1012
1D Compatibility (HY) -30400 + (ID) 8500
Total energy: -375615.0 ( -107.38 by residue)
QMean score : 0.503
|
|
|